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multiple sequence alignment and single nucleotide polymorphisms (snps) analysis  (DNASTAR)


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    DNASTAR multiple sequence alignment and single nucleotide polymorphisms (snps) analysis
    Multiple Sequence Alignment And Single Nucleotide Polymorphisms (Snps) Analysis, supplied by DNASTAR, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/nucleotide+multiple+sequence+alignment/nucleotide+sequences/pm37147554-99-2-15
    Average 90 stars, based on 1 article reviews
    multiple sequence alignment and single nucleotide polymorphisms (snps) analysis - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Gaining insights into the compositional constraints and molecular phylogeny of five silkworms mitochondrial genome.
    Article Snippet: This study was performed to identify codon usage bias (CUB), genetic similarity and phylogenetic analysis of complete mitochondrial genomes along with separate sequences of 13 protein coding genes per each genome from five types of silkworm including Bombyx mori, Bombyx mandarina, Samia cynthia ricini, Antheraea pernyi and Antheraea assama.. Nucleotide composition analysis suggested that AT content was higher than GC content and ttest analysis revealed significance difference (p < 0.01) between AT and GC content.. Relative synonymous CUB analysis revealed most over-represented codon ends with A or T. Parity plot analysis revealed both natural selection and mutation pressure influenced CUB of mitochondrial genes while neutrality plot analysis suggested that role of natural selection was higher than mutation pressure.

    Software:

    Article Title: Gaining insights into the compositional constraints and molecular phylogeny of five silkworms mitochondrial genome.
    Article Snippet: This study was performed to identify codon usage bias (CUB), genetic similarity and phylogenetic analysis of complete mitochondrial genomes along with separate sequences of 13 protein coding genes per each genome from five types of silkworm including Bombyx mori, Bombyx mandarina, Samia cynthia ricini, Antheraea pernyi and Antheraea assama.. Nucleotide composition analysis suggested that AT content was higher than GC content and ttest analysis revealed significance difference (p < 0.01) between AT and GC content.. Relative synonymous CUB analysis revealed most over-represented codon ends with A or T. Parity plot analysis revealed both natural selection and mutation pressure influenced CUB of mitochondrial genes while neutrality plot analysis suggested that role of natural selection was higher than mutation pressure.



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    Image Search Results


    Nucleotide sequence for PfKelch 13 and deduced amino acid sequences, showing the three samples that had mutations.

    Journal: Data in Brief

    Article Title: Data on selected antimalarial drug resistance markers in Zambia

    doi: 10.1016/j.dib.2020.106650

    Figure Lengend Snippet: Nucleotide sequence for PfKelch 13 and deduced amino acid sequences, showing the three samples that had mutations.

    Article Snippet: Multiple nucleotide sequence alignments were analysed by MacVector (Cambridge, UK) using the 3D7 PfK13 sequence (GenBank accession no. XM001350122) as a reference to detect point mutations in the gene.

    Techniques: Sequencing

    Nucleotide composition of the Eriopis patagonia mitogenome. Protein-coding genes (PCGs), transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs).

    Journal: Insects

    Article Title: New Light on Historical Specimens Reveals a New Species of Ladybird (Coleoptera: Coccinellidae): Morphological, Museomic, and Phylogenetic Analyses

    doi: 10.3390/insects11110766

    Figure Lengend Snippet: Nucleotide composition of the Eriopis patagonia mitogenome. Protein-coding genes (PCGs), transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs).

    Article Snippet: The nucleotide multiple sequence alignment used for the phylogenetic analyses are available in Mendely Dataset (Mendeley Data, V1, doi:10.17632/fn8gh9kcpc.1).

    Techniques:

    Nucleotide composition of the Eriopis patagonia mitogenome. Protein-coding genes (PCGs), transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs).

    Journal: Insects

    Article Title: New Light on Historical Specimens Reveals a New Species of Ladybird (Coleoptera: Coccinellidae): Morphological, Museomic, and Phylogenetic Analyses

    doi: 10.3390/insects11110766

    Figure Lengend Snippet: Nucleotide composition of the Eriopis patagonia mitogenome. Protein-coding genes (PCGs), transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs).

    Article Snippet: The nucleotide multiple sequence alignment used for the phylogenetic analyses are available in Mendely Dataset (Mendeley Data, V1, doi:10.17632/fn8gh9kcpc.1).

    Techniques:

    List of nucleotide polymorphism in TaSSIV with their effects on codons and variation in amino acid.

    Journal: Genes

    Article Title: EcoTILLING Reveals Natural Allelic Variations in Starch Synthesis Key Gene TaSSIV and Its Haplotypes Associated with Higher Thousand Grain Weight

    doi: 10.3390/genes10040307

    Figure Lengend Snippet: List of nucleotide polymorphism in TaSSIV with their effects on codons and variation in amino acid.

    Article Snippet: Multiple alignment of nucleotide sequences was conducted by Bioedit 7.0.

    Techniques: Mutagenesis

    Location of single nucleotide polymorphisms (SNPs) in TaSSIV-A , TaSSIV-B and TaSSIV-D .

    Journal: Genes

    Article Title: EcoTILLING Reveals Natural Allelic Variations in Starch Synthesis Key Gene TaSSIV and Its Haplotypes Associated with Higher Thousand Grain Weight

    doi: 10.3390/genes10040307

    Figure Lengend Snippet: Location of single nucleotide polymorphisms (SNPs) in TaSSIV-A , TaSSIV-B and TaSSIV-D .

    Article Snippet: Multiple alignment of nucleotide sequences was conducted by Bioedit 7.0.

    Techniques:

    Nucleotide polymorphisms and functional marker development of TaSSIV-A and TaSSIV-B .

    Journal: Genes

    Article Title: EcoTILLING Reveals Natural Allelic Variations in Starch Synthesis Key Gene TaSSIV and Its Haplotypes Associated with Higher Thousand Grain Weight

    doi: 10.3390/genes10040307

    Figure Lengend Snippet: Nucleotide polymorphisms and functional marker development of TaSSIV-A and TaSSIV-B .

    Article Snippet: Multiple alignment of nucleotide sequences was conducted by Bioedit 7.0.

    Techniques: Functional Assay, Marker